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  • Annual Channelopathy Patient Information Day

    Saturday 22nd June 2013 at Queen Square, London

  • Annual Mitochondrial Patient Information Day

    Saturday 6th July 2013 at Queen Square, London

  • MSG Scientific Annual Meeting 2013 - Oxford

    16-18 September 2013

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Alice Gardiner

Alice Gardiner

Next-generation sequencing in muscle and brain channel disorders

Supervisors:
Professor Mike Hanna
Professor Henry Houlden

An increasing number of patients are being diagnosed with neurological disorders that are likely to be caused by a defect in a channel gene. The advent and implementation of next generation sequencing offers a tremendous opportunity for clinical research and diagnostics to unravel these disorders. Ion channel homeostasis in muscles and the brain is essential to neuronal firing in the CNS and muscle function.

Mutations in these ion channels are important causes of disease but they are under investigated; these diseases are called the channelopathies. They are divided into two subgroups; the skeletal muscle channelopathies (such as non-dystrophic myotonia and periodic paralysis), and the brain channelopathies (such as epilepsy, migraine and episodic ataxia.) Whilst the symptoms of channelopathies differ massively, they all share some common features such as onset in childhood, attacks interspersed with periods of normal function and variation in severity between different patients.

During my 4-year PhD project I will be using next-generation sequencing methods to genetically diagnose patients who have classic symptoms of channelopathies but do have not have a known mutation – the identification of disease genes in families is vital to diagnosis, prognosis and opens the door to treatments. Our department has recently received funding to purchase a MiSeq and a HiSeq2000 sequencer to carry out this work. To do this I will sequence other channels which are not commonly associated with the condition, or parts of culprit channels in which the mutations do not usually occur. I will also utilise next generation sequencing of a large number of genes that may interact or modify known channels. Through this work I hope to find new potential disease-causing mutations, and using functional studies I hope to prove definitively that they are the cause of the patients’ symptoms. Much of my work relies on families and I will be very keen to involve large families with channelopathies to help achieve the goals of my project.

Email: alice.gardiner.10@ucl.ac.uk